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Annotation Overview for fig|1148.1.peg.2978 in Synechocystis sp. PCC 6803:
Aconitate hydratase 2 (EC 4.2.1.3)

current assignmentAconitate hydratase 2 (EC 4.2.1.3)EC Number 4.2.1.3
taxonomy id1148contig
internal linksgenome browser | feature evidence | sequenceACH [?]show essentially identical genes
additional informationCyanobase slr0665
annotation historyrun tool
FigFamFIG001520
data base cross references
(dbxref)

This feature is part of a subsystem
  • In Propionate-CoA to Succinate Module its role is Aconitate hydratase 2 (EC 4.2.1.3). However, this subsystem has been classified as not being functional in this organism.
  • In TCA Cycle its role is Aconitate hydratase 2 (EC 4.2.1.3).
  • In Glyoxylate bypass its role is Aconitate hydratase 2 (EC 4.2.1.3). However, this subsystem has been classified as not being functional in this organism.
  • In Glyoxylate Synthesis its role is Aconitate hydratase 2 (EC 4.2.1.3).

    • Reasons for Current Assignment

    We have assigned the function "Aconitate hydratase 2 (EC 4.2.1.3)" to the encoded protein. The protein occurs in 2 subsystems: "Glyoxylate Synthesis", and "TCA Cycle". In "TCA Cycle", it appears to play a functional role that we have not associated with any other gene. The function of genes having the same functional roles have been described in Shigella sonnei (10585860, 8932712). This is a homologous protein which implements the same function.

    Compare Regions

    The chromosomal region of the focus gene (top) is compared with four similar organisms. The graphic is centered on the focus gene, which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Genes whose relative position is conserved in at least four other species are functionally coupled and share gray background boxes. The size of the region and the number of genomes may be reset. Click on any arrow in the display to refocus the comparison on that gene. The focus gene always points to the right, even if it is located on the minus strand.






    Topic revision: r6 - 02 Mar 2009 - 22:06:54 - Bruce Parrello
     
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    NMPDR is a collaboration among researchers from the Computation Institute of the University of Chicago, the Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the National Center for Supercomputing Applications (NCSA) at the University of Illinois. NMPDR is funded by the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract HHSN266200400042C. Banner images are copyright © Dennis Kunkel.